Bioinformatician

UK Health Security Agency

Information:

This job is now closed

Job summary

Job Title - Bioinformatician

Profession- Bioinformatics

Directorate - Data Operations

Full Time equivalent - 37.5 hours

No of Roles - 1

Contract Type - Fixed Term Contract for 2 Years

Location - Colindale, London NW9 5EQ

Working Pattern - Full Time / Flexible Working/ Hybrid Working

Grade & Salary - Grade HEO. Inner London - £32,978 - £39,691

New entrants to the Civil Service are expected to start on the minimum of the pay band.

The internal roles rules apply to existing Civil Servants, i.e. level transfers move on current salary or the pay range minimum, transfers on promotion move to new pay range minimum or receive 10% increase. Either case is determined by whichever is the highest.

This role is to be appointed under Civil Service Terms & Conditions. Full details on the T&C's are found https://www.ukhsa.reed.com/.

Closing Date - 05/09/2023. 23:55pm. Unfortunately, late applications will not be considered

Interview Date - W/C 11/09/2023 Please note, these dates are subject to change.

Main duties of the job

  • Contribute to day-to-day running and maintenance of the software and computer systems delivering existing UKHSA Whole Genome Sequencing (WGS) pipelines.
  • Contribute to expanding deployment of existing WGS pipelines to additional computational platforms (internal OpenStack, external cloud)
  • Support the identification and sharing of best bioinformatics practice.
  • Contribute to refactoring existing WGS software components
  • Develop tested, validated and versioned software components for WGS analyses, incorporate into and validate new WGS pipeline versions
  • Satisfy support requests logged through helpdesk
  • Analyse data from projects to which you are assigned, accepting responsibility for generating reports within agreed timelines.
  • Lead preparation of reports, posters and publications arising from the data
  • Represent UKHSA at internal, National and International meetings.
  • Work consistent with the Bioinformatics Unit quality management system, ISO and other accreditation standards; participate in quality audits to support the unit's accredited service.
  • Comply with safety and quality protocols and procedures at all times

About us

The Bioinformatics and Whole Genome Sequencing (WGS) Software Development unit is part of Data Analytical Sciences within UKHSA's National Infection Service Division. The unit is globally pre-eminent in the design, construction, validation and deployment of bioinformatics pipelines for the automated analysis of Next Generation Sequencing (NGS) whole Genome Sequence (WGS) data for human bacterial and viral pathogens. Our High Performance Compute (HPC) cluster runs more than 20 fully reproducible in-house pipelines. We also provide support to The National TB unit and the 7 TB control boards by running a TB pipeline in collaboration with Oxford University. Administrationally the Unit consists of 3 groups, respectively headed by Leads for In-House pipelines, for pipeline development, and for TB sequence service delivery. Contributions from members of each group are not constrained by group membership, and are encouraged to be intra-group.

The postholder will contribute across the broad scope of the unit's NGS Service activities, from maintenance and support of existing pipelines to extension of their deployment to further computational architectures (distributed, cloud, local, remote, external).

Date posted

22 August 2023

Pay scheme

Other

Salary

£32,978 to £39,691 a year per annum

Contract

Fixed term

Duration

24 months

Working pattern

Full-time, Flexible working, Home or remote working

Reference number

UKHSA00321

Job locations

Colindale

London

NW9 5EQ


Job description

Job responsibilities

PROFESSIONAL DEVELOPMENT

  • Identify, discuss and action own professional performance and training / development needs with your line manager through appraisal / individual development plan. Attending internal / external training events
  • To participate in all mandatory training as required, i.e. fire safety, information governance and all other mandatory training.

KEY WORKING RELATIONSHIPS

The post holder will develop working relationships and communicate regularly with a wide range of individuals, clinical and non-clinical, internal and external to UKHSA. This will require a high level of communication skills, disseminating complex technical information, and an ability to communicate complex programmatic and IT issues to non-specialist groups in layman terms. This will include;

Internal

  • Substantial interactions with members of the Bioinformatics Team and the Central Sequencing Lab (CSL)
  • Regular interactions with Laboratory scientists, embedded bioinformaticians and epidemiologists.
  • Substantial interactions within DAS and with central IT (ICT) colleagues.

External

  • Interaction with external scientific computing experts to deliver appropriate technologies through external cloud-based resource and utilising UKHSA computing infrastructure.
  • Interactions with collaborating centres (Oxford University, EBI) to deliver software process for analysing WGS data.

We pride ourselves as being an employer of choice, where Everyone Matters promoting equality opportunity to actively encourage applications from everyone, including groups currently underrepresented in our workforce.

UKHSA ethos is to be an inclusive organisation for all our staff and stakeholders. To create, nurture and sustain an inclusive culture, where differences drive innovative solutions to meet the needs of our workforce and wider communities. We do this through celebrating and protecting differences by removing barriers and promoting equity and equality of opportunity for all.

Essential Criteria:

  • Degree in Bioinformatics or a related life science.
  • Postgraduate training in Bioinformatics
  • Familiar with Linux/unix
  • Knowledge of Next Generation Sequencing
  • technologies and associated bioinformatic analytical
  • Experience of bioinformatics tool use,
  • preferably to the analysis of microbial DNA
  • Coding skills, preferably python
  • Highly motivated, enthusiastic and hard working.
  • Interested in the advancements of medical microbiology and genomics
  • Problem solving skills and ability to respond to sudden unexpected demands
  • Must be able to identify, propose and develop improvements to service processes.
  • Ability to analyse complex facts and situations, develop a range of options, make recommendations
  • An understanding of and commitment to equality of opportunity and good working relationships.

Desirable Criteria:

  • Knowledge of AppliedMaths Bionumerics
  • Experience of VCS systems (e.g. git) for software versioning and documentation
  • Awareness of software containerization (e.g. Docker, Singularity)
  • Knowledge of PostgreSQL or similar RDBMS

Selection Process

You will be required to complete an application form. This will be assessed and sifted in line with the essential criteria.

This vacancy is using Success Profiles and will assess your Behaviours and Experience

Stage 1: Application & Sift

As part of the application process, you will be asked to provide a Statement of Suitability in no more than 1000 words providing examples of how you meet the essential criteria and desirable criteria. It should also detail what you and your experience can bring to the role.

Feedback will not be provided at this stage.

If you are successful at this stage, you will progress to interview

Stage 2: Panel Interview

All applicants that progress to interview will be assessed on behaviours / experience / technical / ability through the Success Profiles. Your interview will be remote via Microsoft Teams

The behaviours you will be tested on are:

  1. Working Together
  2. Delivering at Pace
  3. Making effective decisions
  4. Changing and improving

Reserve List:

Candidates who pass the interview criteria but are not offered a post will be kept on a reserve list for 12 months and may be contacted if similar roles become available.

If you are interviewed for the post and do not meet the required threshold for the specified grade, your application may be assessed against a similar, lower grade role and you may be offered the post should one be available.

DBS - People working with government systems must complete Basic Personnel Security Standard (BPSS) checks which includes a disclosure and barring security check. Successful candidates must meet the security requirements before they can be appointed. The level of security needed for this role is BPSS however there may be a requirement for this role to be SC cleared and you should familiarise yourself with the criteria of security clearance.

This role is Open to all external applicants (anyone) from outside the Civil Service (including by definition internal applicants. Appointments to roles within UKHSA will be made in accordance with the Civil Service nationality rules. These can be found athttps://www.gov.uk/government/publications/nationality-rulesThis job is broadly open to the following groups:

  • UK nationals
  • Nationals of Commonwealth countries who have the right to work in the UK
  • Nationals of the Republic of Ireland
  • Nationals from the EU, EEA or Switzerland with settled or pre-settled status or who apply for either status by the deadline of theEuropean Union Settlement Scheme (EUSS)
  • Relevant EU, EEA, Swiss or Turkish nationals working in the Civil Service
  • Relevant EU, EEA, Swiss or Turkish nationals who have built up the right to work in the Civil Service
  • Certain family members of the relevant EU, EEA, Swiss or Turkish nationals

We recruit by merit on the basis of fair and open competition, as outlined in the Civil Service Commission's Recruitment Principles.

The Civil Service embraces diversity and promotes equal opportunities. As such, we run a Disability Confident Scheme (DCS) for candidates with disabilities who meet the minimum selection criteria.

The Civil Service welcomes applications from people who have recently left prison or have an unspent conviction. Read more about prison leaver recruitment.

Once this job has closed, the job advert will no longer be available. You may want to save a copy for your records.

Government baseline personnel security standard

Its important to note that there are currently exceptions to applications being considered if your conviction relates to any of the following:

  • life sentences
  • arson
  • sexual offences
  • hate and terror offences

Some departments will also consider the specific offence against the nature of the business, i.e., a conviction for fraud may rule you out for a finance role

Contact Details Sophie.Rigney@reed.com

Job description

Job responsibilities

PROFESSIONAL DEVELOPMENT

  • Identify, discuss and action own professional performance and training / development needs with your line manager through appraisal / individual development plan. Attending internal / external training events
  • To participate in all mandatory training as required, i.e. fire safety, information governance and all other mandatory training.

KEY WORKING RELATIONSHIPS

The post holder will develop working relationships and communicate regularly with a wide range of individuals, clinical and non-clinical, internal and external to UKHSA. This will require a high level of communication skills, disseminating complex technical information, and an ability to communicate complex programmatic and IT issues to non-specialist groups in layman terms. This will include;

Internal

  • Substantial interactions with members of the Bioinformatics Team and the Central Sequencing Lab (CSL)
  • Regular interactions with Laboratory scientists, embedded bioinformaticians and epidemiologists.
  • Substantial interactions within DAS and with central IT (ICT) colleagues.

External

  • Interaction with external scientific computing experts to deliver appropriate technologies through external cloud-based resource and utilising UKHSA computing infrastructure.
  • Interactions with collaborating centres (Oxford University, EBI) to deliver software process for analysing WGS data.

We pride ourselves as being an employer of choice, where Everyone Matters promoting equality opportunity to actively encourage applications from everyone, including groups currently underrepresented in our workforce.

UKHSA ethos is to be an inclusive organisation for all our staff and stakeholders. To create, nurture and sustain an inclusive culture, where differences drive innovative solutions to meet the needs of our workforce and wider communities. We do this through celebrating and protecting differences by removing barriers and promoting equity and equality of opportunity for all.

Essential Criteria:

  • Degree in Bioinformatics or a related life science.
  • Postgraduate training in Bioinformatics
  • Familiar with Linux/unix
  • Knowledge of Next Generation Sequencing
  • technologies and associated bioinformatic analytical
  • Experience of bioinformatics tool use,
  • preferably to the analysis of microbial DNA
  • Coding skills, preferably python
  • Highly motivated, enthusiastic and hard working.
  • Interested in the advancements of medical microbiology and genomics
  • Problem solving skills and ability to respond to sudden unexpected demands
  • Must be able to identify, propose and develop improvements to service processes.
  • Ability to analyse complex facts and situations, develop a range of options, make recommendations
  • An understanding of and commitment to equality of opportunity and good working relationships.

Desirable Criteria:

  • Knowledge of AppliedMaths Bionumerics
  • Experience of VCS systems (e.g. git) for software versioning and documentation
  • Awareness of software containerization (e.g. Docker, Singularity)
  • Knowledge of PostgreSQL or similar RDBMS

Selection Process

You will be required to complete an application form. This will be assessed and sifted in line with the essential criteria.

This vacancy is using Success Profiles and will assess your Behaviours and Experience

Stage 1: Application & Sift

As part of the application process, you will be asked to provide a Statement of Suitability in no more than 1000 words providing examples of how you meet the essential criteria and desirable criteria. It should also detail what you and your experience can bring to the role.

Feedback will not be provided at this stage.

If you are successful at this stage, you will progress to interview

Stage 2: Panel Interview

All applicants that progress to interview will be assessed on behaviours / experience / technical / ability through the Success Profiles. Your interview will be remote via Microsoft Teams

The behaviours you will be tested on are:

  1. Working Together
  2. Delivering at Pace
  3. Making effective decisions
  4. Changing and improving

Reserve List:

Candidates who pass the interview criteria but are not offered a post will be kept on a reserve list for 12 months and may be contacted if similar roles become available.

If you are interviewed for the post and do not meet the required threshold for the specified grade, your application may be assessed against a similar, lower grade role and you may be offered the post should one be available.

DBS - People working with government systems must complete Basic Personnel Security Standard (BPSS) checks which includes a disclosure and barring security check. Successful candidates must meet the security requirements before they can be appointed. The level of security needed for this role is BPSS however there may be a requirement for this role to be SC cleared and you should familiarise yourself with the criteria of security clearance.

This role is Open to all external applicants (anyone) from outside the Civil Service (including by definition internal applicants. Appointments to roles within UKHSA will be made in accordance with the Civil Service nationality rules. These can be found athttps://www.gov.uk/government/publications/nationality-rulesThis job is broadly open to the following groups:

  • UK nationals
  • Nationals of Commonwealth countries who have the right to work in the UK
  • Nationals of the Republic of Ireland
  • Nationals from the EU, EEA or Switzerland with settled or pre-settled status or who apply for either status by the deadline of theEuropean Union Settlement Scheme (EUSS)
  • Relevant EU, EEA, Swiss or Turkish nationals working in the Civil Service
  • Relevant EU, EEA, Swiss or Turkish nationals who have built up the right to work in the Civil Service
  • Certain family members of the relevant EU, EEA, Swiss or Turkish nationals

We recruit by merit on the basis of fair and open competition, as outlined in the Civil Service Commission's Recruitment Principles.

The Civil Service embraces diversity and promotes equal opportunities. As such, we run a Disability Confident Scheme (DCS) for candidates with disabilities who meet the minimum selection criteria.

The Civil Service welcomes applications from people who have recently left prison or have an unspent conviction. Read more about prison leaver recruitment.

Once this job has closed, the job advert will no longer be available. You may want to save a copy for your records.

Government baseline personnel security standard

Its important to note that there are currently exceptions to applications being considered if your conviction relates to any of the following:

  • life sentences
  • arson
  • sexual offences
  • hate and terror offences

Some departments will also consider the specific offence against the nature of the business, i.e., a conviction for fraud may rule you out for a finance role

Contact Details Sophie.Rigney@reed.com

Person Specification

Experience

Essential

  • oDegree in Bioinformatics or a related life science.
Person Specification

Experience

Essential

  • oDegree in Bioinformatics or a related life science.

Disclosure and Barring Service Check

This post is subject to the Rehabilitation of Offenders Act (Exceptions Order) 1975 and as such it will be necessary for a submission for Disclosure to be made to the Disclosure and Barring Service (formerly known as CRB) to check for any previous criminal convictions.

Certificate of Sponsorship

Applications from job seekers who require current Skilled worker sponsorship to work in the UK are welcome and will be considered alongside all other applications. For further information visit the UK Visas and Immigration website (Opens in a new tab).

From 6 April 2017, skilled worker applicants, applying for entry clearance into the UK, have had to present a criminal record certificate from each country they have resided continuously or cumulatively for 12 months or more in the past 10 years. Adult dependants (over 18 years old) are also subject to this requirement. Guidance can be found here Criminal records checks for overseas applicants (Opens in a new tab).

Additional information

Disclosure and Barring Service Check

This post is subject to the Rehabilitation of Offenders Act (Exceptions Order) 1975 and as such it will be necessary for a submission for Disclosure to be made to the Disclosure and Barring Service (formerly known as CRB) to check for any previous criminal convictions.

Certificate of Sponsorship

Applications from job seekers who require current Skilled worker sponsorship to work in the UK are welcome and will be considered alongside all other applications. For further information visit the UK Visas and Immigration website (Opens in a new tab).

From 6 April 2017, skilled worker applicants, applying for entry clearance into the UK, have had to present a criminal record certificate from each country they have resided continuously or cumulatively for 12 months or more in the past 10 years. Adult dependants (over 18 years old) are also subject to this requirement. Guidance can be found here Criminal records checks for overseas applicants (Opens in a new tab).

Employer details

Employer name

UK Health Security Agency

Address

Colindale

London

NW9 5EQ


Employer's website

https://www.gov.uk/government/organisations/uk-health-security-agency (Opens in a new tab)

Employer details

Employer name

UK Health Security Agency

Address

Colindale

London

NW9 5EQ


Employer's website

https://www.gov.uk/government/organisations/uk-health-security-agency (Opens in a new tab)

For questions about the job, contact:

lead recruiter

sophie rigney

sophie.rigney@reed.com

Date posted

22 August 2023

Pay scheme

Other

Salary

£32,978 to £39,691 a year per annum

Contract

Fixed term

Duration

24 months

Working pattern

Full-time, Flexible working, Home or remote working

Reference number

UKHSA00321

Job locations

Colindale

London

NW9 5EQ


Supporting documents

Privacy notice

UK Health Security Agency's privacy notice (opens in a new tab)